Publications

Role of Cavity Losses on Nonadiabatic Couplings and Dynamics in Polaritonic Chemistry

Panayiota Antoniou, Figen Suchanek, James F. Varner, and Jonathan J. Foley IV, J. Phys. Chem. Lett. , ( 12 Oct 2020 )

Building capacity for undergraduate education and training in computational molecular science: A collaboration between the MERCURY consortium and the Molecular Sciences Software Institute

Ashley Ringer McDonald, Jessica A. Nash, Paul S. Nerenberg, K. Aurelia Ball, Olaseni Sode, Jonathan J. Foley IV, Theresa L. Windus, T. Daniel Crawford, Int. J. Quantum. Chem. , ( 04 Jul 2020 )

Accelerating the Discovery of Multilayer Nanostructures with Analytic Differentiation of the Transfer Matrix Equations

James F. Varner, Dayanara Wert, Aya Matari, Raghad Nofal, Jonathan J. Foley IV, Phys. Rev. Research , ( 07 Jan 2020 )

High-Temperature Selective Emitter Design and Materials: Titanium Aluminum Nitride Alloys for Thermophotovoltaics

Nari Jeon, David Mandia, Stephen Gray, Jonathan J. Foley IV, Alex Martinson, ACS Appl. Mater. Interfaces , ( 25 Oct 2019 )

WPTherml: A Python Package for the Design of Materials for Harnessing Heat

James F. Varner, Noor Eldabagh, Derek Volta, Reem Eldabagh, Jonathan J. Foley IV, Journal of Open Research Software , ( 19 Aug 2019 )

Functionally Related Genes Cluster into Genomic Regions That Coordinate Transcription at a Distance in Saccharomyces cerevisiae

Alanna Cera, Maria K. Holganza, Ahmad Abu Hardan, Irvin Gamarra, Reem S. Eldabagh, Megan Deschaine, Sarah Elkamhawy, Exequiel M. Sisso, Jonathan J. Foley, IV, James T. Arnone, ASM mSphere , ( 13 Mar 2019 )

Resonance Energy Transfer Mediated by Metal–Dielectric Composite Nanostructures

Noor Eldabagh, Matthew Micek, A. Eugene DePrince III, Jonathan J. Foley IV, Journal of Physical Chemistry C , ( 20 Jul 2018 )

Pareto Optimal Spectrally Selective Emitters for Thermophotovoltaics via Weak Absorber Critical Coupling

Nari Jeon, Jonathan J. Hernandez, Daniel Rosenmann, Stephen K. Gray, Alex B. F. Martinson, Jonathan J. Foley IV, Advanced Energy Materials , ( 10 Jul 2018 )

Systematic Identification, Characterization, and Conservation of Adjacent-Gene Coregulation in the Budding Yeast Saccharomyces cerevisiae

Reem S. Eldabagh, Nelson G. Mejia, Rachel L. Barrett, Christopher R. Monzo, Matthew K. So, Jonathan J. Foley IV, James T. Arnone, ASM mSphere , ( 14 Jun 2018 )

Optical nanostructures design, fabrication, and applications for solar/thermal energy conversion

Mool C. Gupta, Craig Ungaro, Jonathan J. Foley IV, Stephen K. Gray", Solar Energy , ( 03 May 2018 )

Optical nanostructures design, fabrication, and applications for solar/thermal energy conversion

Mool C. Gupta, Craig Ungaro, Jonathan J. Foley IV, Stephen K. Gray", Solar Energy , ( 01 May 2018 )

One stone, two birds: silica nanospheres significantly increase photocatalytic activity and colloidal stability of photocatalysts

Kowsalya D. Rasamani, Jonathan J. Foley IV, Yugang Sun, Nano Futures , ( 26 Feb 2018 )

Facilitating Students’ Interaction with Real Gas Properties Using a Discovery-Based Approach and Molecular Dynamics Simulations

Chelsea Sweet, Oyewumi Akinfenwa, Jonathan J. Foley IV, J. Chem. Ed. , ( 14 Feb 2018 )

First-Principles Investigation of Borophene as a Monolayer Transparent Conductor

Lyudmyla Adamska and Sridhar Sadasivam and Jonathan J. Foley IV and Pierre Darancet and Sahar Sharifzadeh, J. Phys. Chem. C , ( 29 Jan 2018 )

Unique hot carrier distributions from scattering mediated absorption

Jason Codrington, Noor Eldabagh, Kimberly Fernando, Jonathan J. Foley IV, ACS Photonics , ( 07 Feb 2017 )

Enhanced optical absorption in semiconductor nanoparticles enabled by nearfield dielectric scattering

Kowsalya D Rasamani, Jonathan J Foley IV, Brittney Beidelman, Yugang Sun, Nano Research , ( 04 Jan 2017 )

Ultraconfined Plasmonic Hotspots Inside Graphene Nanobubbles

Z Fei, J. J. Foley IV, W Gannett, MK Liu, S Dai, GX Ni, A Zettl, MM Fogler, GP Wiederrecht, SK Gray, DN Basov, Nano Letters , ( 14 Nov 2016 )

Nano-optical imaging of WS e 2 waveguide modes revealing light-exciton interactions

Z Fei, ME Scott, DJ Gosztola, J. J. Foley IV, J Yan, DG Mandrus, H Wen, P Zhou, DW Zhang, Y Sun, JR Guest, SK Gray, W Bao, GP Wiederrecht, X Xu, Phys. Rev. B , ( 01 Aug 2016 )

Near-field dielectric scattering promotes optical absorption by platinum nanoparticles

Nan Zhang, Chuang Han, Yi-Jun Xu, Jonathan J. Foley IV, Dongtang Zhang, Jason Codrington, Stephen K. Gray & Yugang Sun, Nature Photon. , ( 01 Jun 2016 )

Design of emitter structures based on resonant perfect absorption for thermophotovoltaic applications

Jonathan J Foley IV, Craig Ungaro, Keye Sun, Mool C Gupta, Stephen K Gray, Optics Express , ( 30 Nov 2015 )

High-index dielectric Huygens metasurface

Karim Ogando, Jonathan J. Foley IV, Daniel López, Optical MEMS and Nanophotonics , ( 02 Aug 2015 )

Reversible modulation of surface plasmons in gold nanoparticles enabled by surface redox chemistry

Zheng Li, Jonathan J. Foley IV, Sheng Peng, Cheng‐Jun Sun, Yang Ren, Gary P Wiederrecht, Stephen K Gray, Yugang Sun, Angewandte Chemie , ( 27 Jul 2015 )

When are Surface Plasmon Polaritons Excited in the Kretschmann-Raether Configuration?

Jonathan J. Foley IV, Hayk Harutyunyan, Daniel Rosenmann, Ralu Divan, Gary P. Wiederrecht, and Stephen K. Gray, Scientific Reports , ( 23 Apr 2015 )

Inhomogeneous Surface Plasmon Polaritons

Jonathan J. Foley IV, Jeffrey M McMahon, George C Schatz, Hayk Harutyunyan, Gary P Wiederrecht, Stephen K Gray, ACS Photonics , ( 01 Aug 2014 )

Ultra‐confined Modes in Metal Nanoparticle Arrays for Subwavelength Light Guiding and Amplification

Edgar Palacios, Aiqing Chen, Jonathan J. Foley IV, Stephen K Gray, Ulrich Welp, Daniel Rosenmann, Vitalii K Vlasko‐Vlasov, Advanced Optical Materials , ( 01 Apr 2014 )

Interfaced metal heterodimers in the quantum size regime

Yugang Sun, Jonathan J. Foley IV, Sheng Peng, Zheng Li, and Stephen K. Gray, Nano Letters , ( 23 Jul 2013 )

Cage versus Prism: Electronic Energies of the Water Hexamer

Jonathan J. Foley IV and David A. Mazziotti, J. Phys. Chem. A , ( 10 Jul 2013 )

Measurement-driven reconstruction of many-particle quantum processes by semidefinite programming with application to photosynthetic light harvesting

Jonathan J. Foley IV and David A. Mazziotti, Phys. Rev. A , ( 23 Jul 2012 )

Strongly correlated mechanisms of a photoexcited radical reaction from the anti-Hermitian contracted Schrödinger equation

Jonathan J. Foley IV, Adam E. Rothman, David A. Mazziotti, J. Chem. Phys. , ( 21 Jan 2011 )

Efficient geometry optimization by Hellmann–Feynman forces with the anti-Hermitian contracted Schrödinger equation

Jonathan J. Foley IV and David A. Mazziotti, Mol. Phys. , ( 10 Oct 2010 )

Conical intersections in triplet excited states of methylene from the anti-Hermitian contracted Schrödinger equation

James W. Snyder, Adam E. Rothman, Jonathan J. Foley IV and David A. Mazziotti, J. Chem. Phys. , ( 21 Apr 2010 )

Open-shell energies and two-electron reduced density matrices from the anti-Hermitian contracted Schrödinger equation: A spin-coupled approach

Adam E. Rothman, Jonathan J. Foley IV and David A. Mazziotti, Phys. Rev. A , ( 23 Nov 2009 )

Activation energies of sigmatropic shifts in propene and acetone enolate from the anti-Hermitian contracted Schrödinger equation

Jonathan J. Foley, Adam E. Rothman, and David A. Mazziotti, J. Chem. Phys. , ( 14 May 2009 )